Skip to report
Independent operating-model audit

Penn Station's Missing Model Is Now Public

The Federal Railroad Administration’s (FRA) Phase I study delivers the first public, simulation-backed hybrid operating plan for New York Penn Station. While the study significantly narrows the RPA’s case for immediate terminal expansion, it does not yet establish a final regional service plan or permanent track geometry.

Liam Blank · Updated July 17, 2026 · Analysis of federal design, procurement, and service-planning decisions.
Current federal program. The FRA released Phase I of the Service Optimization Study on July 15, 2026, directing the Penn Transformation project to incorporate, or at minimum not preclude, platform extensions, up to 23 new vertical circulation elements, a three-zone operating plan, and the potential conversion of Platforms 5 and 6 into a super-wide platform. The retained-track Concept 1 supports up to four commuter through-running trains per hour in each direction and up to 32 peak-direction cross-Hudson trains in the morning peak; Concept 2 doubles commuter through-running but failed dynamic testing under current delay conditions.23

In its April 2026 report, New York Penn Station: Constraints and Considerations for Meeting Future Demand, the Regional Plan Association (RPA) concluded that converting Penn Station entirely to revenue-to-revenue through-running within its existing footprint would reduce station capacity. The RPA calculated that the station could handle 66 trains per hour with today's platform layout, but only 63 trains after widening platforms and removing nine tracks. Both projections fall short of the RPA's 90-train benchmark, which combines 48 peak-direction trains from the west with 42 from the east.1

The FRA tested a different proposition. Its Phase I study team evaluated 86 scenarios using a combination of pedestrian models and 24-hour Rail Traffic Controller (RTC) simulations. They selected a hybrid plan that retains terminal operations, splits train flows into three independent zones, and introduces limited commuter through-running. This combination increases morning peak cross-Hudson capacity from 24 to as many as 32 trains per hour—and 30 in the evening—without building an expensive station annex.23

The FRA’s Phase I study shows that the RPA evaluated a false binary. Penn Station is not forced to choose between total through-running and terminal expansion; a hybrid of selective through-running and retained terminal service can unlock significant capacity within the existing footprint.
Exhibit 1 · RPA's own capacity figures The expansion conclusion follows from the selected benchmark and movement assumptions. The point is simple: RPA's tested cases do not reach the benchmark RPA selected. The public still needs to know whether that benchmark is the right design requirement.
Source: RPA, New York Penn Station: Constraints and Considerations for Meeting Future Demand, April 2026.1
Exhibit 2 · FRA Phase I result A hybrid three-zone station is now the federal operating baseline. Concept 1 combines targeted circulation improvements with separated train flows and limited through-running. It is the first public dynamic simulation showing higher service within the existing footprint.
Source: FRA, New York Penn Station Service Optimization Study, Phase I Report, June 2026, released July 15, 2026.23

FRA has now tested the hybrid RPA omitted

The RPA’s analysis screened only two extreme scenarios: through-running on today’s platform layout, and a wider-platform concept requiring the removal of nine tracks. By comparing these options against its own 90-train benchmark, the RPA treated the resulting capacity shortfall as automatic evidence for physical expansion.1

The FRA’s Phase I analysis took a different route, retaining terminal operations and introducing only the specific through-running needed to deconflict the throat and shorten platform dwells. Concept 1 preserves existing Long Island Rail Road (LIRR) volumes, expands NJ Transit and Amtrak service, and routes up to four commuter trains per hour through the station in each direction. Once the proposed platform and circulation upgrades are in place, the RTC simulation shows that a 32-train morning peak is dynamically feasible under current delay conditions, though a 30-train plan maintains better reliability.23

While this capacity increase does not prove the existing station can absorb the full 48-train Gateway target, nor eliminate the eventual need for expansion, it completely invalidates the RPA’s core inference: that the failure of total through-running proves the immediate necessity of an annex. The controlling design baseline is now a staged hybrid, not the binary choice the RPA evaluated.

The model exists; the reproducible record does not

The Phase I report significantly narrows the earlier evidence gap. It names the specific RTC and pedestrian simulation software, publishes three distinct structural dwell profiles, provides platform-access diagrams, outlines directional train counts, describes how delays are seeded, and clearly distinguishes a paper timetable from a successful dynamic simulation.23

However, the FRA has withheld the raw RTC and PTV (pedestrian simulation) files, complete timetables, run logs, and sensitivity outputs, preventing independent verification or reproduction of the results. To simplify the model, the study standardizes train lengths, treats equipment as indifferent to specific origins and destinations, and assumes every modeled LIRR train runs directly to or from West Side Yard—a simplification the report itself notes is an unlikely tactical operating plan.23

These simplifications directly affect both concepts. While Concept 1 passed dynamic testing at 32 peak trains per hour, Concept 2 failed to survive simulation once real-world arrival variability and West Side Yard congestion were introduced, despite producing a viable paper timetable. The FRA has deferred the operational corrections and necessary regional investments required to make Concept 2 work to Phase II.23

Furthermore, this new model is not the missing simulation behind the controversial October 2024 engineering feasibility study. Amtrak previously confirmed under FOIA that no simulations were performed for that earlier review. The Phase I study is an entirely separate 2025–26 effort with different objectives, inputs, and hybrid operating concepts.24

The disclosure debate has thus narrowed: the public no longer lacks an operating model; it lacks the raw simulation binaries and the Phase II regional service plan needed to verify these results before locking in irreversible track geometry.

The arithmetic behind the conclusion

The RPA organizes Penn Station’s capacity limits around five specific movement types. This taxonomy is critical because the RPA’s resulting capacity hierarchy is entirely driven by the specific dwell times, clearance periods, and platform-use restrictions it assigns to each movement.

Drop-and-go

A train arrives in passenger service, unloads, and continues empty to a yard. RPA also calls this revenue-to-non-revenue through-running.

Load-and-go

An empty train leaves a yard, enters Penn, boards passengers, and departs in revenue service. RPA calls this non-revenue-to-revenue through-running.

Revenue-to-revenue through-running

A passenger train arrives, exchanges passengers, and continues to another passenger destination.

Revenue-to-non-revenue turnback

A passenger train unloads, reverses, and leaves in the direction from which it entered without carrying passengers.

Revenue-to-revenue turnback

A passenger train unloads, boards a new passenger load, reverses, and leaves in the direction from which it entered.

Exhibit 3 · RPA dwell and clearance assumptions Selected passenger-exchange and platform-clearance values drive the through-running result. Each bar uses RPA's published components. The wider-platform case shortens passenger exchange but removes nine tracks, producing a lower station total despite a shorter occupation period.
Source: RPA, April 2026. RPA reports approximately 6 trains per track for drop-and-go, 5 for load-and-go, and 4 for existing-platform revenue-to-revenue through-running.1

The FRA’s modeling recalibrates this arithmetic. Its pedestrian simulations analyze platform-level flows and conclude that adding vertical circulation, decluttering platform space, distributing Amtrak passengers, and providing earlier NJ Transit track announcements can reduce average platform occupancy times by 2.4 minutes. Crucially, this benefit is highly conditional on those specific operating practices; building the physical stairs alone will not generate the modeled dwell reductions.23

Exhibit 4 · Directional passenger demand Penn's peak passenger exchange is highly asymmetric. The 2019 baseline shows why boarding, alighting, platform clearance, and vertical circulation require separate modeling by time period and platform.
Source: MTA / Amtrak / NJ TRANSIT, Penn Station Master Plan Alternatives Report, Final, April 2022, Figure 3-18.9

The benchmark must match the operating question

RPA's 90-train benchmark and FRA's 32-train finding measure different dimensions of capacity. RPA's benchmark represents a combined east-and-west terminal throughput requirement (48 peak-direction approach trains from the west added to 42 from the east). In contrast, FRA reports practical, reliability-constrained trains per hour per direction solely under the Hudson River (the western approach): 24 today, up to 32 in the morning peak, and up to 30 in the evening peak under Concept 1.123

Measure What it means What the design basis must show
Physical approach capacity The maximum train movements the western or eastern approach can pass. Signal headways, junction limits, and supporting Gateway infrastructure.
Scheduled station throughput The trains actually planned through or into Penn in the design hour. Routes, stopping patterns, track assignments, and reverse-peak service.
Passenger capacity The riders carried by the selected train plan. Demand forecasts, train length, equipment capacity, and peak spreading.
Reliability-constrained capacity The service level that survives ordinary arrival and dwell variability. Dynamic simulation, delay distributions, dispatching rules, and recovery margins.

The FRA’s practical capacity results are substantial but incomplete. They unlock 25 to 33 percent more cross-Hudson throughput within the existing footprint, falling short of the full 100 percent increase associated with the Gateway project. Phase II must explain how future demand, regional power and signaling investments, and any remaining expansion plans connect this near-term 32-train concept to the long-term 48-train objective.23

The 2024 feasibility study’s most compelling objection to through-running was the complex interaction among reverse-peak schedules, mixed intercity and commuter trains, platform allocation, and tunnel headways.2 The Phase I study does not erase these physical limits. Instead, it sidesteps the earlier study's 'fatal flaw' conclusions by retaining terminal operations and restricting commuter through-running to a modest four trains per hour under Concept 1.

Exhibit 5 · Revised failure logic Selective through-running changes the service-policy chain that drove the 2024 rejection.
The remaining question is not whether reverse-peak service exists. It is which branch-level timetable and reliability investments allow the hybrid to scale beyond the Phase I service plan.23

The federal baseline is now a staged hybrid

RPA's principal screens do not match the Phase I concept selected by FRA. The federal baseline keeps the existing station footprint and most of its track configuration, separates the station into three operating zones, retains terminal service, and adds limited commuter through-running.

RPA's principal screens
  • Revenue-to-revenue through-running under today's platform constraints.
  • A wider-platform case that removes nine tracks.
  • Comparison against a 90-train summed approach benchmark.
FRA Phase I baseline
  • Three operating zones with retained terminal functions.
  • Platforms 1-3 extended and up to 23 new vertical-circulation elements.
  • Four commuter through-running trains per hour in each direction under Concept 1.

Concept 1 provides the actionable design basis. The master developer should integrate its platform extensions, track deconfliction, and vertical circulation into the Penn Transformation project immediately. In contrast, Concept 2 functions as a spatial preservation requirement rather than an active design plan. The design should reserve space for future stairs and avoid placing new structural columns where Tracks 10 and 11 might eventually be removed, but the agencies must defer permanent track removal until a Phase II service plan passes dynamic simulation.23

Exhibit 6 · FRA capacity result Concept 1 adds practical capacity; Concept 2 changes the service mix without increasing the Phase I maximum.
Source: FRA Phase I Tables 4-6 and Sections 4.3, 5.2, and 5.3.23

The distinction controls the next design decision. Penn Transformation can lock in circulation capacity and preserve future platform widening without claiming that the super-wide-platform operating plan has already passed reliability testing.

The connectivity substitution

The RPA identifies ten distinct rail branches on each side of Penn Station, creating a matrix of 100 possible branch-to-branch routes. Based on this matrix, the RPA argues that any single through-running train is highly unlikely to match a rider's desired origin and destination, illustrating the point with an obscure Hempstead-to-Gladstone pairing.1

This framing substitutes raw combinatorics for actual origin-destination market analysis. Modern transit agencies build high-capacity trunk lines around established passenger demand and track geometry, not randomized branch-to-branch pairings. A credible service design would select a small number of high-volume cross-regional corridors and use timed transfers elsewhere. Evaluating every theoretical branch pairing misses this basic planning reality.

The FRA adopts a narrower, more defensible position. Its Phase I study treats through-running strictly as an operational tool to deconflict tracks and shorten platform dwells, without claiming that a cross-regional travel market already exists. Phase II will conduct actual demand forecasting and model structured service networks—an essential planning sequence that the RPA's abstract branch matrix cannot replace.23

Exhibit 7 · Connectivity test A 10-by-10 branch matrix does not substitute for market-based service planning.
Branch-count frame
  • Starts with every possible branch pair.
  • Treats low direct-pair probability as low network value.
  • Uses an arbitrary outlying pair as the representative rider test.
  • Omits origin-destination volumes and transfer penalties.
Demand-based trunk planning
  • Ranks actual cross-core and near-core travel markets.
  • Selects compatible branches and stopping patterns.
  • Preserves reliable transfers and terminal service where direct service is weak.
  • Tests travel time, ridership, and reliability.
The railroad feasibility study's appendix describes a more selective regional-metro concept using dedicated tracks and a limited set of branches, confirming that targeted service design belongs in the official planning record.2

West Side Yard is the controlling unresolved operating issue

Just as theoretical branch pairings can oversimplify regional travel demand, idealized yard routing can mask severe station constraints. Phase I makes this yard issue concrete. To simplify the simulation, the model assumes every LIRR train begins or ends its run at West Side Yard, meaning no LIRR trains turn back at Penn Station's platforms. The FRA explicitly calls this an 'unlikely tactical operating plan' because reversing a train inside a storage yard is slower and introduces more operational variability than turning it at a station platform.23

Concept 1
  • Retains the present track configuration with targeted extensions and circulation work.
  • Supports four commuter through-runners per hour in each direction.
  • Passes RTC at up to 32 AM TPHPD, with slightly more delay than baseline.
Concept 2
  • Removes Tracks 10 and 11 to combine Platforms 5 and 6.
  • Supports eight commuter through-runners per hour in each direction.
  • Produces a timetable but fails RTC under current variability and West Side Yard congestion.

To resolve the Concept 2 simulation failure, the FRA identifies two possible corrections: turning some LIRR trains directly at the Penn Station platforms, or routing a larger share of commuter trains through the station in revenue service. Phase II must test these operational alternatives, define a regional fleet and routing plan, and identify the supporting line investments required. Until that dynamic modeling succeeds, the proposed super-wide platform should remain a protected future option rather than a committed physical footprint.23

The technical record has changed

The RPA’s historical support for through-running relied on significant new infrastructure, specialized fleet equipment, and unified regional operations. Its April 2026 report shifted focus, screening two extreme, within-footprint options. The FRA’s July 2026 study supplies the critical, missing intermediate case: selective through-running integrated with a retained terminal station.

2008

The RPA’s Access to the Region's Core (ARC) alternatives analysis published demand-model inputs, adjusted its recommendations after reviewing preliminary results, and called for public modeling of alternative capacity allocations.18

2018

The RPA’s Fourth Regional Plan (T-REX) advocated through-running as a core capacity strategy, but assumed the construction of Penn South, additional East River tunnels, and a modernized regional-rail network.19

2020

The RPA's *Case for Penn South* report supported future through-running through purpose-built southern expansion tracks and additional eastward capacity.16

April 2026

The RPA concluded that total through-running within the existing footprint would reduce station capacity, basing its findings on two extreme screening layouts and unpublished operational assumptions.1

July 2026

The FRA published its Phase I study, validating a three-zone hybrid operating model. Using pedestrian simulations and RTC dynamic modeling, the study showed that Concept 1 increases practical cross-Hudson throughput without an annex, while Concept 2 remained unvalidated.23

The new study does not settle Penn Station's ultimate capacity requirement. It does establish that RPA's April screening result cannot serve as the controlling design basis without confronting the federal hybrid model.

Advocacy context raises the disclosure standard

The RPA leads the *Build Gateway Now* advocacy coalition. Freedom of Information Act (FOIA) disclosures show that the RPA administered Amtrak-funded coalition management and research.20 Specifically, funding records show that Amtrak paid the RPA $1.825 million from FY2015 through FY2024 for restricted Gateway advocacy and Build Gateway Now campaigns.22 Furthermore, Amtrak's 2024–25 campaign proposal explicitly added through-running research to the RPA’s funded work plan, noting that the resulting report would present full through-running as disruptive and frame the Penn South expansion as the only practical path forward.20

While this financial history does not prove that Amtrak dictated the RPA’s conclusions, nor that the resulting report is technically incorrect, it demonstrates that the analysis emerged from an advocacy partnership. This relationship, wherein Amtrak funded the RPA's coalition work and designated through-running research in the active work program, significantly raises the disclosure standard for the report's decisive, underlying operating assumptions.

What remains before final geometry

Release the raw model filesShare native RTC and pedestrian binaries, exact timetables, run logs, and sensitivity outputs for independent reproduction.
Resolve the West Side Yard bottleneckSimulate and clear the yard congestion and arrival variability before removing Tracks 10 and 11.
Define regional operationsRun Phase II demand, fleet, routing, governance, and cost analyses to establish the service parameters the station must support.
Bridge the capacity gapIdentify the regional investments needed to scale practical throughput from 32 trains to the 48-train Gateway target, isolating any remaining need for physical expansion.
Phase construction without service cutsProve that platform extensions, vertical circulation additions, and concourse rebuilding can be executed without disrupting existing peak capacity.
Record Status on July 15, 2026 Design consequence
FRA Phase I report Published Establishes the three-zone hybrid and defines the immediate infrastructure scope.
Concept 1 RTC result Conditionally validated Supports up to 32 peak trains per hour, though a 30-train plan maintains better reliability.
Concept 2 RTC result Not validated Failed dynamic testing; do not commit to track removal until a revised plan passes simulation.
Native model and timetable files Not public Withheld from public release; prevents independent review or reproduction of capacity claims.
Phase II regional plan Pending Unresolved; must define regional routing, fleet needs, governance, and the 48-train target.
Penn Expansion decision Not resolved by Phase I Deferred; Phase I does not assess whether a station annex remains necessary after optimization.

The FRA’s Phase I study provides the first model-based evidence that the existing Penn Station footprint can deliver a 25 to 33 percent increase in cross-Hudson capacity through a hybrid operating plan and targeted physical upgrades. This finding materially weakens the RPA’s claim that the failure of total through-running proves the immediate necessity of terminal expansion.23

The Penn Transformation project should actively incorporate Concept 1 and preserve spatial options for Concept 2. It should not permanently remove Tracks 10 and 11, treat 32 trains per hour as the ultimate Gateway solution, or use Phase I to foreclose future expansion until Phase II fully validates a regional service plan and evaluates all remaining alternatives on a common demand and reliability basis.

Sources

RPA reports and related materials

  1. Regional Plan Association, New York Penn Station: Constraints and Considerations for Meeting Future Demand, April 2026, Rachel Weinberger and Joshua Berman.
  2. Regional Plan Association, The Case for Penn South, February 2020.
  3. Regional Plan Association, 2008 ARC alternatives analysis comparing the base, loop, and Madison Avenue-extension concepts, including demand-model inputs and results.
  4. Regional Plan Association, T-REX regional rail plan, 2018.

Agency planning and project records

  1. Amtrak, MTA, and NJ TRANSIT, Doubling Trans-Hudson Train Capacity at New York Penn Station: Engineering Feasibility Study, October 2024, prepared by WSP and FXCollaborative.
  2. MTA / WSP, NY Penn Station Master Plan White Paper: Through-Running, Final, April 2021.
  3. Empire State Development / Partner Agencies, Through-Running at Empire Station Complex, Community Advisory Committee Working Group Briefing, May 18, 2021.
  4. MTA / Amtrak / NJ TRANSIT, Penn Station Master Plan Alternatives Report, Final, April 2022.
  5. Amtrak, New York Penn Station Transformation FAQ, master-developer procurement materials, RFLOI/RFP addenda, and technical baseline / minimum scope requirements, 2025-2026.
  6. USDOT and Amtrak, "Penn Transformation Partners Announced as Master Developer Team for New York Penn Station Renovation," May 20, 2026.
  7. USDOT, New York Penn Station Transformation schedule announcement, August 27, 2025.
  8. Empire State Development Corporation, Final Technical Memorandum for the Moynihan Station Development Project, June 2010, Section 13.
  9. NJ TRANSIT, Gateway Storage Yard and Maintenance Facility project documentation.
  10. Amtrak, Gateway System-Level Design Technical Memorandum, Penn South / Penn Station Integration, 2015.
  11. Federal Railroad Administration, New York Penn Station Service Optimization Study: Phase I Report, June 2026, released July 15, 2026.

Public-record productions

  1. Amtrak FOIA appeal determination, August 14, 2025, Case No. 25-FOI-00443.
  2. Amtrak FOIA response, February 9, 2026, Case No. 26-FOI-00272.
  3. NJ TRANSIT OPRA certified response, July 17, 2025, tracking reference 250717-889312, and later public-record productions concerning Penn-focused RTC and Service Optimization Study materials.
  4. Metropolitan Transportation Authority FOIL response, April 30, 2026, Request R009324-062325.
  5. Amtrak FOIA productions concerning Build Gateway Now scopes, contract modifications, invoices, and communications. Record index.
  6. "Amtrak Funding to RPA: Fiscal Years 2015-2024," funding summary compiled from RPA annual reports, audited financial statements, Form 990 filings, and ProPublica Nonprofit Explorer records.

This report evaluates RPA's April 2026 operating case against the FRA Phase I record released July 15, 2026. Phase I establishes a viable hybrid baseline; Phase II and the native simulation record must resolve the remaining service, reliability, and geometry decisions.